Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs4857056 chr3:97013334 C/T 6.12E-13 501 31.47 32.82 37.77 KM Plot
THCA rs4857272 chr3:97272806 T/C 7.35E-5 499 31.47 31.2 34.07 KM Plot
THCA rs4873797 chr8:144571187 T/C 6.19E-7 492 31.7 30.92 21.93 KM Plot
THCA rs4873802 chr8:144620855 C/A 5.84E-6 497 31.7 30.92 26.32 KM Plot
THCA rs4874140 chr8:144571841 C/G 5.81E-7 493 31.7 31.3 21.93 KM Plot
THCA rs4874144 chr8:144608418 G/T 1.87E-5 493 31.6 31.57 23.8 KM Plot
THCA rs4874149 chr8:144631988 G/A 2.79E-5 481 31.6 31.88 23.8 KM Plot
THCA rs4881462 chr10:5536666 C/G 4.96E-5 492 31.8 31.43 31.47 KM Plot
THCA rs4883545 chr12:133252556 C/T 8.59E-5 503 30.57 32.6 31.15 KM Plot
THCA rs4917379 chr10:104752831 A/T 6.98E-14 503 31.15 36.02 32.1 KM Plot
THCA rs4917382 chr10:104838510 G/A 6.92E-14 503 31.27 35.33 32.1 KM Plot
THCA rs4917986 chr10:104630181 T/C 2.95E-9 499 31.03 35.35 29.58 KM Plot
THCA rs4917988 chr10:104752830 T/G 6.98E-14 503 31.15 36.02 32.1 KM Plot
THCA rs4918001 chr10:105013147 G/T 0.000107 503 32.1 35.08 31.03 KM Plot
THCA rs4919694 chr10:104698978 T/C 3.16E-9 501 31.03 34.18 29.58 KM Plot